BIOLOGY ANIMAL

The Nature of ATP | How to Make ATP | Learning Objectives | Terms |

The Nature of ATP |
Adenosine triphosphate (ATP), the energy currency or coin of the cell pictured in Figfures 1 and 2, transfers energy from chemical bonds to endergonic (energy absorbing) reactions within the cell. Structurally, ATP consists of the adenine nucleotide (ribose sugar, adenine base, and phosphate group, PO4-2) plus two other phosphate groups.




Figure 2. A cartoon and space-filling view of ATP. Image from Purves et al., Life: The Science of Biology, 4th Edition, by Sinauer Associates (www.sinauer.com) and WH Freeman (www.whfreeman.com), used with permission.












Energy is stored in the covalent bonds between phosphates, with the greatest amount of energy (approximately 7 kcal/mole) in the bond between the second and third phosphate groups. This covalent bond is known as a pyrophosphate bond.

We can write the chemical reaction for the formation of ATP as:

a) in chemicalese: ADP + Pi + energy ----> ATP

b) in English: Adenosine diphosphate + inorganic Phosphate + energy produces Adenosine Triphosphate

The chemical formula for the expenditure/release of ATP energy can be written as:

a) in chemicalese: ATP ----> ADP + energy + Pi

b) in English Adenosine Triphosphate produces Adenosine diphosphate + energy + inorganic Phosphate

An analogy between ATP and rechargeable batteries is appropriate. The batteries are used, giving up their potential energy until it has all been converted into kinetic energy and heat/unusable energy. Recharged batteries (into which energy has been put) can be used only after the input of additional energy. Thus, ATP is the higher energy form (the recharged battery) while ADP is the lower energy form (the used battery). When the terminal (third) phosphate is cut loose, ATP becomes ADP (Adenosine diphosphate; di= two), and the stored energy is released for some biological process to utilize. The input of additional energy (plus a phosphate group) "recharges" ADP into ATP (as in my analogy the spent batteries are recharged by the input of additional energy).

How to Make ATP |
Two processes convert ADP into ATP: 1) substrate-level phosphorylation; and 2) chemiosmosis. Substrate-level phosphorylation occurs in the cytoplasm when an enzyme attaches a third phosphate to the ADP (both ADP and the phosphates are the substrates on which the enzyme acts). This is illustrated in Figure 3.

Figure 3. Enzymes and the formation of NADH and ATP. Images from Purves et al., Life: The Science of Biology, 4th Edition, by Sinauer Associates (www.sinauer.com) and WH Freeman (www.whfreeman.com), used with permission.










Chemiosmosis, shown in Figure 4, involves more than the single enzyme of substrate-level phosphorylation. Enzymes in chemiosmotic synthesis are arranged in an electron transport chain that is embedded in a membrane. In eukaryotes this membrane is in either the chloroplast or mitochondrion. According to the chemiosmosis hypothesis proposed by Peter Mitchell in 1961, a special ATP-synthesizing enzyme is also located in the membranes. Mitchell would later win the Nobel Prize for his work.

Figure 4. A typical representation of an electron transport chain. Images from Purves et al., Life: The Science of Biology, 4th Edition, by Sinauer Associates (www.sinauer.com) and WH Freeman (www.whfreeman.com), used with permission.












During chemiosmosis in eukaryotes, H+ ions are pumped across an organelle membrane by membrane "pump proteins" into a confined space (bounded by membranes) that contains numerous hydrogen ions. This is shown in Figure 4 and 5. The energy for the pumping comes from the coupled oxidation-reduction reactions in the electron transport chain. Electrons are passed from one membrane-bound enzyme to another, losing some energy with each tansfer (as per the second law of thermodynamics). This "lost" energy allows for the pumping of hydrogen ions against the concentration gradient (there are fewer hydrogen ions outside the confined space than there are inside the confined space). The confined hydrogens cannot pass back through the membrane. Their only exit is through the ATP synthesizing enzyme that is located in the confining membrane. As the hydrogen passes through the ATP synthesizing enzyme, energy from the enzyme is used to attach a third phosphate to ADP, converting it to ATP.

Usually the terminal phosphate is not simply removed, but instead is attached to another molecule. This process is known as phosphorylation.

W + ATP -----> W~P + ADP where W is any compound, for example:

glucose + ATP -----> glucose~P + ADP

Glucose can be converted into Glucose-6-phosphate by the addition of the phosphate group from ATP.

ATP serves as the biological energy company, releasing energy for both anabolic and catabolic processes and being recharged by energy generated from other catabolic reactions.

Learning Objectives |
Describe the components, organization, and functions of an electron transport system.
ATP is composed of ribose, a five-carbon sugar, three phosphate groups, and adenine , a nitrogen-containing compound (also known as a nitrogenous base). What class of organic macromolecules is composed of monomers similar to ATP?
ATP directly or indirectly delivers energy to almost all metabolic pathways. Explain the functioning of the ATP/ADP cycle.
Adding a phosphate to a molecule is called phosphorylation. What two methods do cells use to phosphorylate ADP into ATP?
Terms | Back to Top
adenine nucleotide
Adenosine diphosphate
Adenosine triphosphate (ATP)
anabolic
catabolic
chemiosmosis

chloroplast
covalent bonds
cytoplasm
electron transport chain
endergonic
enzyme

mitochondrion
oxidation-reduction
phosphorylation
ribose
second law of thermodynamics




Links |
- Energy View an online slideshow (102 slides) by Susan Blanchard that covers thermodynamics, ATP and all that stuff.

- The Nobel Prize in Chemistry 1997 Three scientists were awarded the Nobel Prize in 1997 for their work studying enzymes involved with the formation and use of ATP. The press release is of particular note.

- The Nobel Prize in Chemistry 1978 Press Release Peter D. Mitchell proposed a wild idea about how ATP was made...and he was subsequently validated by other researchers. Read the Nobel Foundation Press release announcing the prize.

- Small Molecules for Modern Biology This site requires the Chime Plugin (available from that site) for your browser. You can view images of a variety of small molecules, including ATP.

- Mitochondrial Mysteries Demystified This site uses the Shockwave Plugin to provide a multimedia tour of the mitochondrion and its role in cellular metabolism.